excelparser

Module from parsing an excelfile and creating an ontology from it.

The excelfile is read by pandas and the pandas dataframe should have column names: prefLabel, altLabel, Elucidation, Comments, Examples, subClassOf, Relations.

Note that correct case is mandatory.

ExcelError (EMMOntoPyException)

Raised on errors in Excel file.

Source code in ontopy/excelparser.py

class ExcelError(EMMOntoPyException):
    """Raised on errors in Excel file."""

create_ontology_from_excel(excelpath, concept_sheet_name='Concepts', metadata_sheet_name='Metadata', imports_sheet_name='ImportedOntologies', dataproperties_sheet_name='DataProperties', objectproperties_sheet_name='ObjectProperties', annotationproperties_sheet_name='AnnotationProperties', base_iri='http://emmo.info/emmo/domain/onto#', base_iri_from_metadata=True, imports=None, catalog=None, force=False, input_ontology=None)

Creates an ontology from an Excel-file.

Parameters:

Name	Type	Description	Default
excelpath	str	Path to Excel workbook.	required
concept_sheet_name	str	Name of sheet where concepts are defined. The second row of this sheet should contain column names that are supported. Currently these are 'prefLabel','altLabel', 'Elucidation', 'Comments', 'Examples', 'subClassOf', 'Relations'. Multiple entries are separated with ';'.	'Concepts'
metadata_sheet_name	str	Name of sheet where metadata are defined. The first row contains column names 'Metadata name' and 'Value' Supported 'Metadata names' are: 'Ontology IRI', 'Ontology vesion IRI', 'Ontology version Info', 'Title', 'Abstract', 'License', 'Comment', 'Author', 'Contributor'. Multiple entries are separated with a semi-colon (;).	'Metadata'
imports_sheet_name	str	Name of sheet where imported ontologies are defined. Column name is 'Imported ontologies'. Fully resolvable URL or path to imported ontologies provided one per row.	'ImportedOntologies'
dataproperties_sheet_name	str	Name of sheet where data properties are defined. The second row of this sheet should contain column names that are supported. Currently these are 'prefLabel','altLabel', 'Elucidation', 'Comments', 'Examples', 'subPropertyOf', 'Domain', 'Range', 'dijointWith', 'equivalentTo'.	'DataProperties'
annotationproperties_sheet_name	str	Name of sheet where annotation properties are defined. The second row of this sheet should contain column names that are supported. Currently these are 'prefLabel', 'altLabel', 'Elucidation', 'Comments', 'Examples', 'subPropertyOf', 'Domain', 'Range'.	'AnnotationProperties'
objectproperties_sheet_name	str	Name of sheet where object properties are defined.The second row of this sheet should contain column names that are supported. Currently these are 'prefLabel','altLabel', 'Elucidation', 'Comments', 'Examples', 'subPropertyOf', 'Domain', 'Range', 'inverseOf', 'dijointWith', 'equivalentTo'.	'ObjectProperties'
base_iri	str	Base IRI of the new ontology.	'http://emmo.info/emmo/domain/onto#'
base_iri_from_metadata	bool	Whether to use base IRI defined from metadata.	True
imports	list	List of imported ontologies.	None
catalog	dict	Imported ontologies with (name, full path) key/value-pairs.	None
force	bool	Forcibly make an ontology by skipping concepts that are erroneously defined or other errors in the excel sheet.	False
input_ontology	Optional[ontopy.ontology.Ontology]	Ontology that should be updated. Default is None, which means that a completely new ontology is generated. If an input_ontology to be updated is provided, the metadata sheet in the excel sheet will not be considered.	None

Returns:

Type

Description

A tuple with the

created ontology associated catalog of ontology names and resolvable path as dict a dictionary with lists of concepts that raise errors, with the following keys: "already_defined": These are concepts (classes) that are already in the ontology, because they were already added in a previous line of the excelfile/pandas dataframe, or because it is already defined in an imported ontology with the same base_iri as the newly created ontology. "in_imported_ontologies": Concepts (classes) that are defined in the excel, but already exist in the imported ontologies. "wrongly_defined": Concepts (classes) that are given an invalid prefLabel (e.g. with a space in the name). "missing_subClassOf": Concepts (classes) that are missing parents. These concepts are added directly under owl:Thing. "invalid_subClassOf": Concepts (classes) with invalidly defined parents. These concepts are added directly under owl:Thing. "nonadded_concepts": List of all concepts (classes) that are not added, either because the prefLabel is invalid, or because the concept has already been added once or already exists in an imported ontology. "obj_prop_already_defined": Object properties that are already defined in the ontology. "obj_prop_in_imported_ontologies": Object properties that are defined in the excel, but already exist in the imported ontologies. "obj_prop_wrongly_defined": Object properties that are given an invalid prefLabel (e.g. with a space in the name). "obj_prop_missing_subPropertyOf": Object properties that are missing parents. "obj_prop_invalid_subPropertyOf": Object properties with invalidly defined parents. "obj_prop_nonadded_entities": List of all object properties that are not added, either because the prefLabel is invalid, or because the concept has already been added once or already exists in an imported ontology. "obj_prop_errors_in_properties": Object properties with invalidly defined properties. "obj_prop_errors_in_range": Object properties with invalidly defined range. "obj_prop_errors_in_domain": Object properties with invalidly defined domain. "annot_prop_already_defined": Annotation properties that are already defined in the ontology. "annot_prop_in_imported_ontologies": Annotation properties that are defined in the excel, but already exist in the imported ontologies. "annot_prop_wrongly_defined": Annotation properties that are given an invalid prefLabel (e.g. with a space in the name). "annot_prop_missing_subPropertyOf": Annotation properties that are missing parents. "annot_prop_invalid_subPropertyOf": Annotation properties with invalidly defined parents. "annot_prop_nonadded_entities": List of all annotation properties that are not added, either because the prefLabel is invalid, or because the concept has already been added once or already exists in an imported ontology. "annot_prop_errors_in_properties": Annotation properties with invalidly defined properties. "data_prop_already_defined": Data properties that are already defined in the ontology. "data_prop_in_imported_ontologies": Data properties that are defined in the excel, but already exist in the imported ontologies. "data_prop_wrongly_defined": Data properties that are given an invalid prefLabel (e.g. with a space in the name). "data_prop_missing_subPropertyOf": Data properties that are missing parents. "data_prop_invalid_subPropertyOf": Data properties with invalidly defined parents. "data_prop_nonadded_entities": List of all data properties that are not added, either because the prefLabel is invalid, or because the concept has already been added once or already exists in an imported ontology. "data_prop_errors_in_properties": Data properties with invalidly defined properties. "data_prop_errors_in_range": Data properties with invalidly defined range. "data_prop_errors_in_domain": Data properties with invalidly defined domain.

Source code in ontopy/excelparser.py

def create_ontology_from_excel(  # pylint: disable=too-many-arguments, too-many-locals
    excelpath: str,
    concept_sheet_name: str = "Concepts",
    metadata_sheet_name: str = "Metadata",
    imports_sheet_name: str = "ImportedOntologies",
    dataproperties_sheet_name: str = "DataProperties",
    objectproperties_sheet_name: str = "ObjectProperties",
    annotationproperties_sheet_name: str = "AnnotationProperties",
    base_iri: str = "http://emmo.info/emmo/domain/onto#",
    base_iri_from_metadata: bool = True,
    imports: list = None,
    catalog: dict = None,
    force: bool = False,
    input_ontology: Union[ontopy.ontology.Ontology, None] = None,
) -> Tuple[ontopy.ontology.Ontology, dict, dict]:
    """
    Creates an ontology from an Excel-file.

    Arguments:
        excelpath: Path to Excel workbook.
        concept_sheet_name: Name of sheet where concepts are defined.
            The second row of this sheet should contain column names that are
            supported. Currently these are 'prefLabel','altLabel',
            'Elucidation', 'Comments', 'Examples', 'subClassOf', 'Relations'.
            Multiple entries are separated with ';'.
        metadata_sheet_name: Name of sheet where metadata are defined.
            The first row contains column names 'Metadata name' and 'Value'
            Supported 'Metadata names' are: 'Ontology IRI',
            'Ontology vesion IRI', 'Ontology version Info', 'Title',
            'Abstract', 'License', 'Comment', 'Author', 'Contributor'.
            Multiple entries are separated with a semi-colon (`;`).
        imports_sheet_name: Name of sheet where imported ontologies are
            defined.
            Column name is 'Imported ontologies'.
            Fully resolvable URL or path to imported ontologies provided one
            per row.
        dataproperties_sheet_name: Name of sheet where data properties are
            defined. The second row of this sheet should contain column names
            that are supported. Currently these are 'prefLabel','altLabel',
            'Elucidation', 'Comments', 'Examples', 'subPropertyOf',
            'Domain', 'Range', 'dijointWith', 'equivalentTo'.
        annotationproperties_sheet_name: Name of sheet where annotation
            properties are defined. The second row of this sheet should contain
            column names that are supported. Currently these are 'prefLabel',
            'altLabel', 'Elucidation', 'Comments', 'Examples', 'subPropertyOf',
            'Domain', 'Range'.
        objectproperties_sheet_name: Name of sheet where object properties are
            defined.The second row of this sheet should contain column names
            that are supported. Currently these are 'prefLabel','altLabel',
            'Elucidation', 'Comments', 'Examples', 'subPropertyOf',
            'Domain', 'Range', 'inverseOf', 'dijointWith', 'equivalentTo'.
        base_iri: Base IRI of the new ontology.
        base_iri_from_metadata: Whether to use base IRI defined from metadata.
        imports: List of imported ontologies.
        catalog: Imported ontologies with (name, full path) key/value-pairs.
        force: Forcibly make an ontology by skipping concepts
            that are erroneously defined or other errors in the excel sheet.
        input_ontology: Ontology that should be updated.
            Default is None,
            which means that a completely new ontology is generated.
            If an input_ontology to be updated is provided,
            the metadata sheet in the excel sheet will not be considered.


    Returns:
        A tuple with the:

            * created ontology
            * associated catalog of ontology names and resolvable path as dict
            * a dictionary with lists of concepts that raise errors, with the
              following keys:

                - "already_defined": These are concepts (classes)
                    that are already in the
                    ontology, because they were already added in a
                    previous line of the excelfile/pandas dataframe, or because
                    it is already defined in an imported ontology with the same
                    base_iri as the newly created ontology.
                - "in_imported_ontologies": Concepts (classes)
                    that are defined in the
                    excel, but already exist in the imported ontologies.
                - "wrongly_defined": Concepts (classes) that are given an
                    invalid prefLabel (e.g. with a space in the name).
                - "missing_subClassOf": Concepts (classes) that are missing
                    parents. These concepts are added directly under owl:Thing.
                - "invalid_subClassOf": Concepts (classes) with invalidly
                    defined parents.
                    These concepts are added directly under owl:Thing.
                - "nonadded_concepts": List of all concepts (classes) that are
                    not added,
                    either because the prefLabel is invalid, or because the
                    concept has already been added once or already exists in an
                    imported ontology.
                - "obj_prop_already_defined": Object properties that are already
                    defined in the ontology.
                - "obj_prop_in_imported_ontologies": Object properties that are
                    defined in the excel, but already exist in the imported
                    ontologies.
                - "obj_prop_wrongly_defined": Object properties that are given
                    an invalid prefLabel (e.g. with a space in the name).
                - "obj_prop_missing_subPropertyOf": Object properties that are
                    missing parents.
                - "obj_prop_invalid_subPropertyOf": Object properties with
                    invalidly defined parents.
                - "obj_prop_nonadded_entities": List of all object properties
                    that are not added, either because the prefLabel is invalid,
                    or because the concept has already been added once or
                    already exists in an imported ontology.
                - "obj_prop_errors_in_properties": Object properties with
                    invalidly defined properties.
                - "obj_prop_errors_in_range": Object properties with invalidly
                    defined range.
                - "obj_prop_errors_in_domain": Object properties with invalidly
                    defined domain.
                - "annot_prop_already_defined": Annotation properties that are
                    already defined in the ontology.
                - "annot_prop_in_imported_ontologies":  Annotation properties
                    that
                    are defined in the excel, but already exist in the imported
                    ontologies.
                - "annot_prop_wrongly_defined": Annotation properties that are
                    given an invalid prefLabel (e.g. with a space in the name).
                - "annot_prop_missing_subPropertyOf": Annotation properties that
                    are missing parents.
                - "annot_prop_invalid_subPropertyOf": Annotation properties with
                    invalidly defined parents.
                - "annot_prop_nonadded_entities": List of all annotation
                    properties that are not added, either because the prefLabel
                    is invalid, or because the concept has already been added
                    once or already exists in an imported ontology.
                - "annot_prop_errors_in_properties": Annotation properties with
                    invalidly defined properties.
                - "data_prop_already_defined": Data properties that are already
                    defined in the ontology.
                - "data_prop_in_imported_ontologies": Data properties that are
                    defined in the excel, but already exist in the imported
                    ontologies.
                - "data_prop_wrongly_defined":  Data properties that are given
                    an invalid prefLabel (e.g. with a space in the name).
                - "data_prop_missing_subPropertyOf": Data properties that are
                    missing parents.
                - "data_prop_invalid_subPropertyOf": Data properties with
                    invalidly defined parents.
                - "data_prop_nonadded_entities": List of all data properties
                    that are not added, either because the prefLabel is invalid,
                    or because the concept has already been added once or
                    already exists in an imported ontology.
                - "data_prop_errors_in_properties": Data properties with
                    invalidly defined properties.
                - "data_prop_errors_in_range": Data properties with invalidly
                    defined range.
                - "data_prop_errors_in_domain": Data properties with invalidly
                    defined domain.

    """
    web_protocol = "http://", "https://", "ftp://"

    def _relative_to_absolute_paths(path):
        if isinstance(path, str):
            if not path.startswith(web_protocol):
                path = os.path.dirname(excelpath) + "/" + str(path)
        return path

    try:
        imports = pd.read_excel(
            excelpath, sheet_name=imports_sheet_name, skiprows=[1]
        )
    except ValueError:
        imports = pd.DataFrame()
    else:
        # Strip leading and trailing white spaces in paths
        imports.replace(r"^\s+", "", regex=True).replace(
            r"\s+$", "", regex=True
        )
        # Set empty strings to nan
        imports = imports.replace(r"^\s*$", np.nan, regex=True)
        if "Imported ontologies" in imports.columns:
            imports["Imported ontologies"] = imports[
                "Imported ontologies"
            ].apply(_relative_to_absolute_paths)

    # Read datafile TODO: Some magic to identify the header row
    conceptdata = pd.read_excel(
        excelpath, sheet_name=concept_sheet_name, skiprows=[0, 2]
    )
    try:
        objectproperties = pd.read_excel(
            excelpath, sheet_name=objectproperties_sheet_name, skiprows=[0, 2]
        )
        if "prefLabel" not in objectproperties.columns:
            warnings.warn(
                "The 'prefLabel' column is missing in "
                f"{objectproperties_sheet_name}. "
                "New object properties will not be added to the ontology."
            )
            objectproperties = None
    except ValueError:
        warnings.warn(
            f"No sheet named {objectproperties_sheet_name} found "
            f"in {excelpath}. "
            "New object properties will not be added to the ontology."
        )
        objectproperties = None
    try:
        annotationproperties = pd.read_excel(
            excelpath,
            sheet_name=annotationproperties_sheet_name,
            skiprows=[0, 2],
        )
        if "prefLabel" not in annotationproperties.columns:
            warnings.warn(
                "The 'prefLabel' column is missing in "
                f"{annotationproperties_sheet_name}. "
                "New annotation properties will not be added to the ontology."
            )
            annotationproperties = None
    except ValueError:
        warnings.warn(
            f"No sheet named {annotationproperties_sheet_name} "
            f"found in {excelpath}. "
            "New annotation properties will not be added to the ontology."
        )
        annotationproperties = None

    try:
        dataproperties = pd.read_excel(
            excelpath, sheet_name=dataproperties_sheet_name, skiprows=[0, 2]
        )
        if "prefLabel" not in dataproperties.columns:
            warnings.warn(
                "The 'prefLabel' column is missing in "
                f"{dataproperties_sheet_name}. "
                "New data properties will not be added to the ontology."
            )
            dataproperties = None
    except ValueError:
        warnings.warn(
            f"No sheet named {dataproperties_sheet_name} found in {excelpath}. "
            "New data properties will not be added to the ontology."
        )
        dataproperties = None

    metadata = pd.read_excel(excelpath, sheet_name=metadata_sheet_name)
    return create_ontology_from_pandas(
        data=conceptdata,
        objectproperties=objectproperties,
        dataproperties=dataproperties,
        annotationproperties=annotationproperties,
        metadata=metadata,
        imports=imports,
        base_iri=base_iri,
        base_iri_from_metadata=base_iri_from_metadata,
        catalog=catalog,
        force=force,
        input_ontology=input_ontology,
    )

create_ontology_from_pandas(data, objectproperties, annotationproperties, dataproperties, metadata, imports, base_iri='http://emmo.info/emmo/domain/onto#', base_iri_from_metadata=True, catalog=None, force=False, input_ontology=None)

Create an ontology from a pandas DataFrame.

Check 'create_ontology_from_excel' for complete documentation.

Source code in ontopy/excelparser.py

def create_ontology_from_pandas(  # pylint:disable=too-many-locals,too-many-branches,too-many-statements,too-many-arguments
    data: pd.DataFrame,
    objectproperties: pd.DataFrame,
    annotationproperties: pd.DataFrame,
    dataproperties: pd.DataFrame,
    metadata: pd.DataFrame,
    imports: pd.DataFrame,
    base_iri: str = "http://emmo.info/emmo/domain/onto#",
    base_iri_from_metadata: bool = True,
    catalog: dict = None,
    force: bool = False,
    input_ontology: Union[ontopy.ontology.Ontology, None] = None,
) -> Tuple[ontopy.ontology.Ontology, dict]:
    """
    Create an ontology from a pandas DataFrame.

    Check 'create_ontology_from_excel' for complete documentation.
    """
    # Get ontology to which new concepts should be added
    if input_ontology:
        onto = input_ontology
        catalog = {}
    else:  # Create new ontology
        onto, catalog = get_metadata_from_dataframe(
            metadata, base_iri, imports=imports
        )

        # Set given or default base_iri if base_iri_from_metadata is False.
        if not base_iri_from_metadata:
            onto.base_iri = base_iri
    # onto.sync_python_names()
    # prefLabel, label, and altLabel
    # are default label annotations
    onto.set_default_label_annotations()
    # Add object properties
    if objectproperties is not None:
        objectproperties = _clean_dataframe(objectproperties)
        (
            onto,
            objectproperties_with_errors,
            added_objprop_indices,
        ) = _add_entities(
            onto=onto,
            data=objectproperties,
            entitytype=owlready2.ObjectPropertyClass,
            force=force,
        )

    if annotationproperties is not None:
        annotationproperties = _clean_dataframe(annotationproperties)
        (
            onto,
            annotationproperties_with_errors,
            added_annotprop_indices,
        ) = _add_entities(
            onto=onto,
            data=annotationproperties,
            entitytype=owlready2.AnnotationPropertyClass,
            force=force,
        )

    if dataproperties is not None:
        dataproperties = _clean_dataframe(dataproperties)
        (
            onto,
            dataproperties_with_errors,
            added_dataprop_indices,
        ) = _add_entities(
            onto=onto,
            data=dataproperties,
            entitytype=owlready2.DataPropertyClass,
            force=force,
        )
    onto.sync_attributes(
        name_policy="uuid", name_prefix="EMMO_", class_docstring="elucidation"
    )
    # Clean up data frame with new concepts
    data = _clean_dataframe(data)
    # Add entities
    onto, entities_with_errors, added_concept_indices = _add_entities(
        onto=onto, data=data, entitytype=owlready2.ThingClass, force=force
    )

    # Add entity properties in a second loop
    for index in added_concept_indices:
        row = data.loc[index]
        properties = row["Relations"]
        if properties == "nan":
            properties = None
        if isinstance(properties, str):
            try:
                entity = onto.get_by_label(row["prefLabel"].strip())
            except NoSuchLabelError:
                pass
            props = properties.split(";")
            for prop in props:
                try:
                    entity.is_a.append(evaluate(onto, prop.strip()))
                except pyparsing.ParseException as exc:
                    warnings.warn(
                        # This is currently not tested
                        f"Error in Property assignment for: '{entity}'. "
                        f"Property to be Evaluated: '{prop}'. "
                        f"{exc}"
                    )
                    entities_with_errors["errors_in_properties"].append(
                        entity.name
                    )
                except NoSuchLabelError as exc:
                    msg = (
                        f"Error in Property assignment for: {entity}. "
                        f"Property to be Evaluated: {prop}. "
                        f"{exc}"
                    )
                    if force is True:
                        warnings.warn(msg)
                        entities_with_errors["errors_in_properties"].append(
                            entity.name
                        )
                    else:
                        raise ExcelError(msg) from exc

    # Add range and domain for object properties
    if objectproperties is not None:
        onto, objectproperties_with_errors = _add_range_domain(
            onto=onto,
            properties=objectproperties,
            added_prop_indices=added_objprop_indices,
            properties_with_errors=objectproperties_with_errors,
            force=force,
        )
        for key, value in objectproperties_with_errors.items():
            entities_with_errors["obj_prop_" + key] = value
    # Add range and domain for annotation properties
    if annotationproperties is not None:
        onto, annotationproperties_with_errors = _add_range_domain(
            onto=onto,
            properties=annotationproperties,
            added_prop_indices=added_annotprop_indices,
            properties_with_errors=annotationproperties_with_errors,
            force=force,
        )
        for key, value in annotationproperties_with_errors.items():
            entities_with_errors["annot_prop_" + key] = value

    # Add range and domain for data properties
    if dataproperties is not None:
        onto, dataproperties_with_errors = _add_range_domain(
            onto=onto,
            properties=dataproperties,
            added_prop_indices=added_dataprop_indices,
            properties_with_errors=dataproperties_with_errors,
            force=force,
        )
        for key, value in dataproperties_with_errors.items():
            entities_with_errors["data_prop_" + key] = value

    # Synchronise Python attributes to ontology
    onto.sync_attributes(
        name_policy="uuid", name_prefix="EMMO_", class_docstring="elucidation"
    )
    onto.dir_label = False
    entities_with_errors = {
        key: set(value) for key, value in entities_with_errors.items()
    }
    return onto, catalog, entities_with_errors

get_metadata_from_dataframe(metadata, base_iri, base_iri_from_metadata=True, imports=None, catalog=None)

Create ontology with metadata from pd.DataFrame

Source code in ontopy/excelparser.py

def get_metadata_from_dataframe(  # pylint: disable=too-many-locals,too-many-branches,too-many-statements
    metadata: pd.DataFrame,
    base_iri: str,
    base_iri_from_metadata: bool = True,
    imports: pd.DataFrame = None,
    catalog: dict = None,
) -> Tuple[ontopy.ontology.Ontology, dict]:
    """Create ontology with metadata from pd.DataFrame"""

    # base_iri from metadata if it exists and base_iri_from_metadata
    if base_iri_from_metadata:
        try:
            base_iris = _parse_literal(metadata, "Ontology IRI", metadata=True)
            if len(base_iris) > 1:
                warnings.warn(
                    "More than one Ontology IRI given. The first was chosen."
                )
            base_iri = base_iris[0] + "#"
        except (TypeError, ValueError, AttributeError, IndexError):
            pass

    # Create new ontology
    onto = get_ontology(base_iri)

    # Add imported ontologies
    catalog = {} if catalog is None else catalog
    locations = set()
    for _, row in imports.iterrows():
        # for location in imports:
        location = row["Imported ontologies"]
        if not pd.isna(location) and location not in locations:
            imported = onto.world.get_ontology(location).load()
            onto.imported_ontologies.append(imported)
            catalog[imported.base_iri.rstrip("#/")] = location
            try:
                cat = read_catalog(location.rsplit("/", 1)[0])
                catalog.update(cat)
            except ReadCatalogError:
                warnings.warn(f"Catalog for {imported} not found.")
            locations.add(location)
        # set defined prefix
        if not pd.isna(row["prefix"]):
            # set prefix for all ontologies with same 'base_iri_root'
            if not pd.isna(row["base_iri_root"]):
                onto.set_common_prefix(
                    iri_base=row["base_iri_root"], prefix=row["prefix"]
                )
            # If base_root not given, set prefix only to top ontology
            else:
                imported.prefix = row["prefix"]

    with onto:
        # Add title
        try:
            _add_literal(
                metadata,
                onto.metadata.title,
                "Title",
                metadata=True,
                only_one=True,
            )
        except AttributeError:
            pass

        # Add license
        try:
            _add_literal(
                metadata, onto.metadata.license, "License", metadata=True
            )
        except AttributeError:
            pass

        # Add authors/creators
        try:
            _add_literal(
                metadata, onto.metadata.creator, "Author", metadata=True
            )
        except AttributeError:
            pass

        # Add contributors
        try:
            _add_literal(
                metadata,
                onto.metadata.contributor,
                "Contributor",
                metadata=True,
            )
        except AttributeError:
            pass

        # Add versionInfo
        try:
            _add_literal(
                metadata,
                onto.metadata.versionInfo,
                "Ontology version Info",
                metadata=True,
                only_one=True,
            )
        except AttributeError:
            pass
    return onto, catalog